NeuroML Documentation

User documentation

Mission and Aims
How to use this documentation
Getting started with NeuroML
Finding and sharing NeuroML models
Creating NeuroML models
Validating NeuroML Models
Visualising NeuroML Models
Simulating NeuroML Models
Optimising/Fitting NeuroML Models
Schema/Specification
- NeuroML v2
  - NeuroMLCoreDimensions
  - NeuroMLCoreCompTypes
  - Cells
  - Channels
  - Synapses
  - Inputs
  - Networks
  - PyNN
  - Simulation
- NeuroML v1
Using NeuroML 2 and LEMS
Software and Tools
Frequently asked questions (FAQ)

NeuroML events

October 2021: NeuroML development workshop at COMBINE meeting
August 2021: NeuroML tutorial at INCF Training Weeks
July 2021: NeuroML tutorial at CNS*2021
March 2021: NeuroML hackathon at HARMONY 2021
Past NeuroML Events

The NeuroML Initiative

Getting in touch
Overview of standards in neuroscience
A brief history of NeuroML
NeuroML Editorial Board
- History of the NeuroML Editorial Board
- Workshop and Meeting reports
NeuroML Scientific Committee
Funding and Acknowledgements
NeuroML contributors
Code of Conduct

Developer documentation

Overview
Interaction with other languages and standards

Reference

Glossary
Bibliography

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Using NeuroML 2 and LEMS¶

While the tutorials cover many of the key points of using LEMS with NeuroML, there are some points which require further explanation:

What are the conventions/best practices to follow in naming NeuroML/LEMS files/elements?
How are units and dimensions handled in NeuroML and LEMS?
How do I use a LEMS Simulation file to specify how to execute a NeuroML model?
How can I extend NeuroML model to include new types using LEMS?
What is the correct format/usage of paths and quantities in NeuroML and LEMS?

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NeuroML v1

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Conventions

By NeuroML contributors
© Copyright 2021.